[Nauty] Re: nauty-list digest, Vol 1 #116 - 3 msgs

Senlin Liang sliang at cs.nmsu.edu
Fri Mar 11 11:58:01 EST 2005


Hello everyone,

I am trying to figure out how can make nauty works correctly with the 
attached input file.

The representation of a graph is as discussed in the following previous 
mail.

Does any one have some idea?

Regards,
Senlin

On Thu, 17 Feb 2005 nauty-list-request at cs.anu.edu.au wrote:

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> or, via email, send a message with subject or body 'help' to
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>
> Today's Topics:
>
>   1. A question. (Senlin Liang)
>   2. Re: A question. (Sterten at aol.com)
>   3. Re: A question. (SHIUE-YUAN SHIAU)
>
> --__--__--
>
> Message: 1
> Date: Tue, 15 Feb 2005 22:24:20 -0700 (MST)
> From: Senlin Liang <sliang at cs.nmsu.edu>
> To: nauty-list at cs.anu.edu.au
> Subject: [Nauty] A question.
> Reply-To: nauty-list at cs.anu.edu.au
>
> Hello everyone,
>
> I am a newcomer to nauty and I am reading "nauty User's Guide". But I
> still do not know how to use the software. Would someone like to tell me
> how to use it by give an detailed example?
>
> By the way, I have installed version 2.2.
>
> Thanks!
>
> Regards,
> Senlin
>
>
> --__--__--
>
> Message: 2
> From: Sterten at aol.com
> Date: Wed, 16 Feb 2005 01:47:54 EST
> Subject: Re: [Nauty] A question.
> To: nauty-list at cs.anu.edu.au
> Reply-To: nauty-list at cs.anu.edu.au
>
>
> -------------------------------1108536474
> Content-Type: text/plain; charset="US-ASCII"
> Content-Transfer-Encoding: 7bit
>
>> I am a newcomer to nauty and I am reading "nauty User's Guide".  But I
>> still do not know how to use the software. Would someone  like to tell me
>> how to use it by give an detailed example?
>
> apparantly nauty was designed for those who already understand
> something  about the matter and i.e. for programmers who want
> to integrate it into their  own programs.
> So, bad luck for "newcomers" :-(
> You can't even get  executables but rather will have to compile it
> by yourself in a complicated  procedure with lots of files and
> a certain chance that something is  incompatible with your operating
> system or C-compiler.
>
> I made my own commandline programs to generate canonical forms
> or  automorphism groups from graphs read from file in a simple
> format, which I  think are more suitable for newcomers.
> I could send these as executables, the  source should
> already be here in the archive.
> Provided Brendan has no  objective due to license or proper
> format/version/reference.
>
> I basically use 3 programs, which I would recommend to
> get started for  newcomers:
> geng.exe , as supplied with the nauty-package (as geng.c) to  generate
> all (canonical=isomorphism-classes) graphs with  certain properties
> canonize.exe , to print the canonical form(s) of graphs in  a file
> (almost same as labelg.c but other  format)
> gauto.exe , prints size of automorphismgroup or its  generators
> (don't know whether nauty can do this from  commandline ?!)
>
> I rarely need others of the nauty programs like genbg etc.
>
> Also, nauty usually uses compressed,  non-human-readable,
> newcomer-unfriendly format - this is probably because  disk-space
> and RAM were expensive when nauty was first developed.
>
>
>
>
> BTW. I just looked at amtog.c (version 2.2)
> Can we make an option to  let n be (as the default)
> the square-root of the number od 0s or 1s found  before
> an EOL(ascii 10) or a user-defined separation character ?
> This  enables to get graphs of different sizes into one file
> and their sizes  needn't be specified.
> It would also be nice if amtog could convert  back
> from sparse6 or such to matrix-format.
> And then, even include the  other features like showg,complg,copyg,...
> into one file. Makes it easier  than to have lots of files IMO.
>
>
>
> -Guenter.
>
> -------------------------------1108536474
> Content-Type: text/html; charset="US-ASCII"
> Content-Transfer-Encoding: quoted-printable
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> <HTML><HEAD>
> <META http-equiv=3DContent-Type content=3D"text/html; charset=3DUS-ASCII">
> <META content=3D"MSHTML 6.00.2800.1141" name=3DGENERATOR></HEAD>
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> <DIV>&nbsp;&gt;I am a newcomer to nauty and I am reading "nauty User's Guide=
> ".=20
> But I <BR>&nbsp;&gt;still do not know how to use the software. Would someone=
> =20
> like to tell me <BR>&nbsp;&gt;how to use it by give an detailed example?</DI=
> V>
> <DIV>&nbsp;</DIV>
> <DIV>apparantly nauty was designed for those who already understand<BR>somet=
> hing=20
> about the matter and i.e. for programmers who want<BR>to integrate it into t=
> heir=20
> own programs.<BR>So, bad luck for "newcomers" :-(<BR>You can't even get=20
> executables but rather will have to compile it<BR>by yourself in a complicat=
> ed=20
> procedure with lots of files and<BR>a certain chance that something is=20
> incompatible with your operating<BR>system or C-compiler.</DIV>
> <DIV>&nbsp;</DIV>
> <DIV>I made my own commandline programs to generate canonical forms<BR>or=20
> automorphism groups from graphs read from file in a simple<BR>format, which=20=
> I=20
> think are more suitable for newcomers.<BR>I could send these as executables,=
> the=20
> source should<BR>already be here in the archive.<BR>Provided Brendan has no=20
> objective due to license or proper<BR>format/version/reference.</DIV>
> <DIV>&nbsp;</DIV>
> <DIV>I basically use 3 programs, which I would recommend to<BR>get started f=
> or=20
> newcomers:<BR>geng.exe , as supplied with the nauty-package (as geng.c) to=20
> generate<BR>&nbsp;&nbsp;&nbsp; all (canonical=3Disomorphism-classes) graphs=20=
> with=20
> certain properties<BR>canonize.exe , to print the canonical form(s) of graph=
> s in=20
> a file<BR>&nbsp;&nbsp;&nbsp; (almost same as labelg.c but other=20
> format)<BR>gauto.exe , prints size of automorphismgroup or its=20
> generators<BR>&nbsp;&nbsp;&nbsp; (don't know whether nauty can do this from=20
> commandline ?!)</DIV>
> <DIV>&nbsp;</DIV>
> <DIV>I rarely need others of the nauty programs like genbg etc.</DIV>
> <DIV>&nbsp;</DIV>
> <DIV>Also, nauty usually uses compressed,=20
> non-human-readable,<BR>newcomer-unfriendly format - this is probably because=
> =20
> disk-space<BR>and RAM were expensive when nauty was first developed.</DIV>
> <DIV>&nbsp;</DIV>
> <DIV>&nbsp;</DIV>
> <DIV>&nbsp;</DIV>
> <DIV><BR>BTW. I just looked at amtog.c (version 2.2)<BR>Can we make an optio=
> n to=20
> let n be (as the default)<BR>the square-root of the number od 0s or 1s found=
> =20
> before<BR>an EOL(ascii 10) or a user-defined separation character ?<BR>This=20
> enables to get graphs of different sizes into one file<BR>and their sizes=20
> needn't be specified.<BR>It would also be nice if amtog could convert=20
> back<BR>from sparse6 or such to matrix-format.<BR>And then, even include the=
> =20
> other features like showg,complg,copyg,...<BR>into one file. Makes it easier=
> =20
> than to have lots of files IMO.</DIV>
> <DIV>&nbsp;</DIV>
> <DIV>&nbsp;</DIV>
> <DIV>&nbsp;</DIV>
> <DIV>-Guenter.</DIV></FONT></FONT></BODY></HTML>
>
> -------------------------------1108536474--
>
>
> --__--__--
>
> Message: 3
> Date: Wed, 16 Feb 2005 11:13:37 -0600
> From: SHIUE-YUAN SHIAU <sshiau2 at wisc.edu>
> Subject: Re: [Nauty] A question.
> To: nauty-list at cs.anu.edu.au
> Reply-To: nauty-list at cs.anu.edu.au
>
>   Hi
>    I am also a newcomer. I have been struggling to make an executable
> that is suitable to find the automorphism group of strongly regular
> graphs with format like 5X5 graph
> 01100
> 10010
> 10001
> 01001
> 00110
> where 1 represents two adjacent vertices and 0 non-adjacent vertices.
> But so far I have little idea how to do it.
>
>   If your simple format is similar to the above and if it is ok for you
> to share with newcomers.
>   Or if you or anyone have any suggestions or show me some examples,  I
> will appreciate your great help,
>
>  Sean
>
>> I made my own commandline programs to generate canonical forms
>> or  automorphism groups from graphs read from file in a simple
>> format, which I  think are more suitable for newcomers.
>> I could send these as executables, the  source should
>> already be here in the archive.
>> Provided Brendan has no  objective due to license or proper
>> format/version/reference.
>>
>> I basically use 3 programs, which I would recommend to
>> get started for  newcomers:
>> geng.exe , as supplied with the nauty-package (as geng.c) to  generate
>> all (canonical=isomorphism-classes) graphs with  certain properties
>> canonize.exe , to print the canonical form(s) of graphs in  a file
>> (almost same as labelg.c but other  format)
>> gauto.exe , prints size of automorphismgroup or its  generators
>> (don't know whether nauty can do this from  commandline ?!)
>>
>
>
>
>
> --__--__--
>
> _______________________________________________
> This is the nauty mailing list
> Post messages to nauty-list at cs.anu.edu.au
> http://cs.anu.edu.au/~bdm/nauty/
> http://cs.anu.edu.au/mailman/listinfo/nauty-list
>
>
> End of nauty-list Digest
>
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