[Nauty-list] Failed compile on Ubuntu 9.04

[Jason Grout]

We just recently realized (in the Sage project) that nauty 2.4 fails to 
compile on Ubuntu 9.04. Has anyone else seen this or fixed it?

Thanks,

Jason

--
Jason Grout


$ gcc -v
Using built-in specs.
Target: i486-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 
4.4.1-4ubuntu8' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs 
--enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr 
--enable-shared --enable-multiarch --enable-linker-build-id 
--with-system-zlib --libexecdir=/usr/lib --without-included-gettext 
--enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 
--program-suffix=-4.4 --enable-nls --enable-clocale=gnu 
--enable-libstdcxx-debug --enable-objc-gc --enable-targets=all 
--disable-werror --with-arch-32=i486 --with-tune=generic 
--enable-checking=release --build=i486-linux-gnu --host=i486-linux-gnu 
--target=i486-linux-gnu
Thread model: posix
gcc version 4.4.1 (Ubuntu 4.4.1-4ubuntu8)

$ ./configure
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking if gcc supports -O4 flags... yes
checking if gcc supports -march=i686 flags... yes
CFLAGS= -O4 -march=i686
MORECFLAGS=
checking for sys/wait.h that is POSIX.1 compatible... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/wait.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for pid_t... yes
checking if malloc is declared in stdlib.h or malloc.h... 1
checking if ftell is declared in stdio.h... 1
checking if fdopen is declared in stdio.h... 1
checking if popen is declared in stdio.h... 1
checking if putenv is declared in stdlib.h... 1
checking if setenv is declared in stdlib.h... 1
checking if INFINITY is declared in math.h... 1
checking for int... yes
checking size of int... 4
checking for long... yes
checking size of long... 4
checking for long long... yes
checking size of long long... 8
checking for an ANSI C-conforming const... yes
checking for isatty... yes
checking for times... yes
checking for time... yes
checking for gettimeofday... yes
checking for times... (cached) yes
checking for getrusage... yes
checking for perror... yes
checking for pipe... yes
checking for wait... yes
checking for popen... yes
checking for putenv... yes
checking for setenv... yes
checking for getc_unlocked... yes
checking for flockfile... yes
checking for gsort... no
checking for sort... sort
configure: creating ./config.status
config.status: creating makefile
config.status: creating nauty.h
config.status: creating naututil.h
config.status: creating gtools.h

$ make
gcc -c -O4 -march=i686 naututil.c
gcc -c -O4 -march=i686 nauty.c
gcc -c -O4 -march=i686 nautil.c
gcc -c -O4 -march=i686 nautinv.c
gcc -c -O4 -march=i686 naugraph.c
gcc -c -O4 -march=i686 rng.c
gcc -o dreadnaut -O4 -march=i686 dreadnaut.c \
naututil.o nauty.o nautil.o nautinv.o naugraph.o rng.o
gcc -c -O4 -march=i686 gtools.c
In file included from gtools.c:6:
gtools.h:159: error: conflicting types for ‘getline’
/usr/include/stdio.h:651: note: previous declaration of ‘getline’ was here
gtools.c:375: error: conflicting types for ‘getline’
/usr/include/stdio.h:651: note: previous declaration of ‘getline’ was here
gtools.c: In function ‘gt_abort’:
gtools.c:1835: warning: format not a string literal and no format arguments
make: *** [gtools.o] Error 1